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    Basic pipet technique training

    Ying-Yu Hu

    Published: 2024-03-28 DOI: 10.17504/protocols.io.36wgqjo4yvk5/v1
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    Abstract

    Here we adopt the molybdate colorimetric reaction from our Total particulate phosphorus (TPP) measurement as a training material for our new lab members to learn basic pipetting technique.

    Citation
    YY Hu, AJ Irwin, ZV Finkel 2022 Improving quantification of particulate phosphorus Limnology and Oceanography: Methods 10.1002/lom3.10517

    Before start

    Steps

    Preparing standard working solutions

    1.

    Date:

    Trainee:

    2.

    Need the following materials:

    AB
    Microtube rack
    17 X 2 mL microtubes
    MilliQ water container
    10 uL pipet
    100 uL pipet
    1000 uL pipet
    10 uL pipet tip
    100 uL pipet tip
    1000 uL pipet tip
    Vortex mixer
    Sharpies
    Primary stock solution of KH2PO4
    MilliQ
    3.

    How to aspire and dispense with pipet

    (a) When aspiring solution, ensure the pipette to be held vertically.

    (b) When dispensing, ensure you hold the pipette at an angle (10-45°). Working to these angles ensures the desired liquid amount is drawn into the tip properly and that all of the liquid is fully dispensed without leaving any residue in the tip.

    http://www.americanlaboratory.com/914-Application-Notes/240482-Ten-Tips-for-Proper-Pipetting
    http://www.americanlaboratory.com/914-Application-Notes/240482-Ten-Tips-for-Proper-Pipetting

    Note
    Always pay attention to the pipet tip, check if there is air bubble in the tip or slightly leaking on the tip.

    4.

    Standard working solutions

    AB
    ABCDE
    S10500
    S22498
    S35495
    S410490
    S525475
    S650450
    S775425
    S8100400

    Prepare working reagents

    5.

    Need the following materials:

    AB
    50 mL Falcon tube (3)
    Transfer pipet (1)
    Scoopula (1)
    Anti-static weighting plate (2)
    MilliQ
    Kimwipe
    Chamber balance
    Graduated cylinder (1X25 mL)
    Goggles
    6.

    2.5% ammonium molybdate reagent

    6.1.

    In an anti-static weight plate, weigh ~0.25 g ammonium molybdate, transfer into the labelled falcon tube.

    A
    6.2.

    Measure 10 mL MilliQ (use transfer pipet for the final topping)

    6.3.

    Rinse the residue on the weighing plate into the falcon tube with the MilliQ.

    6.4.

    Transfer all remaining MilliQ into the falcon tube

    7.

    10% ascorbic acid reagent (avoid light exposure)

    7.1.

    In an anti-static weight plate, weigh ~1 g ascorbic acid, transfer into the labelled falcon tube.

    A
    7.2.

    Measure 9 mL MilliQ (use transfer pipet for the final topping)

    7.3.

    Rinse the residue on the weighing plate into the falcon tube with the MilliQ.

    7.4.

    Transfer all remaining MilliQ into the falcon tube

    8.

    Sulfuric acid reagent:

    8.1.

    Measure 17 mL MilliQ (use transfer pipet for the final topping) and transfer into a Falcon tube

    8.2.

    Carefully add 1mL 18 concentrated sulfuric acid into the water

    9.

    Vortex ammonium molybdate and ascorbic acid solutions.

    10.

    Use graduated cylinder, measure and transfer 6 mL 2.5% ammonium molybdate reagent into the sulfuric acid tube.

    11.

    Use graduated cylinder, measure and transfer 6 mL 10% ascorbic acid reagent into the sulfuric acid tube.

    12.

    Vortex the reagent.

    Colorimetric measurement

    13.

    Preheat incubator/shaker to 37°C

    Equipment

    ValueLabel
    SHAKING INCUBATORNAME
    71LTYPE
    Corning® LSE™BRAND
    6753SKU
    14.

    Add 500µL reagent to each standard working solution.

    15.

    Vortex each tube.

    16.

    Incubate at 37°C for 1h 0m 0s while shaking at 200 rpm

    17.

    Load microplate with 250 uL reactant from each tube, duplicate.

    18.

    Layout in the microplate:

    ABCDE
    AS1S1S1S1
    BS2S2S2S2
    CS3S3S3S3
    DS4S4S4S4
    ES5S5S5S5
    FS6S6S6S6
    GS7S7S7S7
    HS8S8S8S8
    19.

    Turn on microplate reader

    Equipment

    ValueLabel
    Varioskan LUX Multimode Microplate ReaderNAME
    Thermo FisherBRAND
    VL0L00D0SKU
    20.

    Setup layout and method

    AB
    Shake duration00:00:05
    Shaking typeContinuous
    Shaking forceHigh
    Shaking speed [rpm]600
    Wavelength [nm]820
    Measurement Time [ms]100
    21.

    Place microplate onto the plate holder

    22.

    Read the plate

    23.

    Export data to Excel sheet

    Calculation

    24.

    In the Excel sheet, subtract the average absorbance at 820 nm of the blank standard replicates from the absorbance at 820 nm of all other standard working solutions.

    This gives the corrected absorbance from each well.

    25.

    Calculate the concentration of each standard working solution

    Unit for each content:

    Primary concentration g/L

    Primary volume uL

    MilliQ volume uL

    Standard working solution g/L

    Phosphate in standard working solution uM

    26.

    Y-axis: Corrected absorbance

    X-axis: Phosphate (uM)

    Calculate slope ( S ), intercept ( b ), coefficient of determination (R2), standard deviation (Sy) of the absorbance from the four replicates of the blank, and LOD = 3.3 X S y/ S

    AB
    S
    b
    R2
    Sy
    LOD

    Review

    27.

    What information does LOD provide?

    28.

    Is it necessary to be aware of the order when mixing water with concentrated sulfuric acid?

    Clean-up

    29.

    Neutralize acidic chemicals with baking soda in a plastic beaker

    30.

    Rinse microtubes and microplate with tap water

    31.

    Dispose microtubes and microplate into recyclable garbage bin

    32.

    Dispose pipet tips into sharp garbage container

    33.

    Rinse graduated cylinder, Falcon tubes and MilliQ container with DI water, place them into a basket to air-dry

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